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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_44115941_44126927_F

Intron Information:

Intron Rank:
148962
Intron Class:
major
Intron Phase:
Intron Coordinates:
44115941 - 44126927
Intron Length:
10987

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCAG
5'SS Class:
strong_major
3'SS Sequence:
TCACTCTCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
CTGTTATGAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
68.8
43.8
Major BPS
79
0.72
1
78.4
31.2
Major PPT
67.7
0.4
0.9
67.3
33.6
Minor 5ss
37.2
-1.4
3
46.7
48.6
Minor BPS
49.5
-0
1.7
60.62
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030130
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021899
44115870 - 44127163
11294