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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_44141400_44151808_F

Intron Information:

Intron Rank:
128354
Intron Class:
major
Intron Phase:
Intron Coordinates:
44141400 - 44151808
Intron Length:
10409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAATGC
5'SS Class:
strong_major
3'SS Sequence:
TCATTCTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TAGATCTCAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
69.3
36.6
Major BPS
100
1.24
0.5
100
0
Major PPT
82
0.72
0.8
80.5
31.2
Minor 5ss
37.6
-1.4
3.2
50.9
45.7
Minor BPS
47.5
-0.3
1.7
50.84
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019135
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045563
44141318 - 44165284
23967