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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_44151875_44153029_F

Intron Information:

Intron Rank:
128355
Intron Class:
major
Intron Phase:
Intron Coordinates:
44151875 - 44153029
Intron Length:
1155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAATA
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTGTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
GCTTTCCAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.7
85.9
23.8
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
81.4
0.71
0.8
75.8
32.6
Minor 5ss
31.6
-2.1
3
39.7
45.8
Minor BPS
48.8
-0
2
68.49
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019135
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045563
44141318 - 44165284
23967