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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_44255505_44344705_F

Intron Information:

Intron Rank:
124229
Intron Class:
major
Intron Phase:
Intron Coordinates:
44255505 - 44344705
Intron Length:
89201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCATTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTTTTTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
81.4
33
Major BPS
100
1.24
0.5
100
0
Major PPT
90.1
0.9
0.7
89.7
25.6
Minor 5ss
42.7
-0.8
3.4
64.6
46.7
Minor BPS
60.6
0.42
1.7
78.3
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016963
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040073
44255304 - 44364916
109613