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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4432987_4434418_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4432987 - 4434418
Intron Length:
1432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TTCTTTTTTGAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TCTTTTCTAACT
Flanking Amino Acid:
HVEGEKIENPDTGLYYDEYL
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
81.2
32.7
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
83.4
0.75
0.9
86.2
25.3
Minor 5ss
41.5
-0.9
2.8
57
41.2
Minor BPS
67
0.61
1.6
83.74
37.5

Associated Gene:

Gene:
NUCB2
Ensembl Gene ID:
ENSAPLG00000010426
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010903
4432843 - 4449294
16452