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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_44344773_44364897_F

Intron Information:

Intron Rank:
124230
Intron Class:
major
Intron Phase:
Intron Coordinates:
44344773 - 44364897
Intron Length:
20125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACACAA
5'SS Class:
major
3'SS Sequence:
TTCTTTTTTCAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTAACCACAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.2
67.8
39.3
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
82.6
0.73
1
82.5
32.9
Minor 5ss
36.8
-1.5
3.1
47.7
47.7
Minor BPS
57.2
0.3
1.9
79.75
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016963
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040073
44255304 - 44364916
109613