Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_44344773_44375333_F

Intron Information:

Intron Rank:

124227

Intron Class:

major

Intron Phase:

Intron Coordinates:

44344773 - 44375333

Intron Length:

30561

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACACAA

5'SS Class:

major

3'SS Sequence:

GGGCTCTTGACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TCATTTTCATTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.6

0.63

1.2

67.8

39.3

Major BPS

100

1.24

0.5

100

Major PPT

62.6

0.28

1.1

56.9

43.4

Minor 5ss

36.8

-1.5

3.1

47.7

Minor BPS

47.9

-0

1.7

63.88

41.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016963

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025378

44344666 - 44375517

30852