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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4434527_4435814_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4434527 - 4435814
Intron Length:
1288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTGACA
Flanking Amino Acid:
LQTADIEEIKSGKLSRELDL
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
80.7
33.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89
0.88
0.8
87.5
30
Minor 5ss
34.6
-1.7
2.9
43
44
Minor BPS
79.3
0.92
1
85.48
26.3

Associated Gene:

Gene:
NUCB2
Ensembl Gene ID:
ENSAPLG00000010426
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010903
4432843 - 4449294
16452