Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4435942_4438652_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4435942 - 4438652

Intron Length:

2711

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGAATA

5'SS Class:

strong_major

3'SS Sequence:

CTTGTTCTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

CTTATTTTAATG

Flanking Amino Acid:

LIKAKMDSVQDTGIDHQALL

Intron Amino Acid Position:

127

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

94.1

1.04

0.7

89.9

22.1

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

0.83

0.7

84.6

30.3

Minor 5ss

37.1

-1.5

48.8

46.9

Minor BPS

62.3

0.25

1.4

62.86

40.1

Associated Gene:

Gene:

NUCB2

Ensembl Gene ID:

ENSAPLG00000010426

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010903

4432843 - 4449294

16452