Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_44376801_44397848_F

Intron Information:

Intron Rank:

124233

Intron Class:

major

Intron Phase:

Intron Coordinates:

44376801 - 44397848

Intron Length:

21048

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGCGGC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCATTCTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

ATTACTTTAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.5

0.88

0.9

70.6

41.4

Major BPS

100

1.24

0.5

100

Major PPT

85.6

0.8

0.7

78.8

34.4

Minor 5ss

36.7

-1.5

3.3

50.2

46.4

Minor BPS

77.4

0.94

1.1

87.04

32.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016963

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041096

44364937 - 44398267

33331