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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4444749_4445288_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4444749 - 4445288
Intron Length:
540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGAGA
5'SS Class:
major
3'SS Sequence:
TATTTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
ATGTTTGTATTT
Flanking Amino Acid:
KEFLEPDSWETLDQQQLFTE
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.5
39.9
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
90
0.9
0.7
85.2
29.1
Minor 5ss
31.7
-2.1
3.1
40.5
45.2
Minor BPS
45.6
-0.2
2.1
64.75
41.1

Associated Gene:

Gene:
NUCB2
Ensembl Gene ID:
ENSAPLG00000010426
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010903
4432843 - 4449294
16452