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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_44552402_44555901_R

Intron Information:

Intron Rank:
137655
Intron Class:
major
Intron Phase:
Intron Coordinates:
44552402 - 44555901
Intron Length:
3500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCTA
5'SS Class:
major
3'SS Sequence:
TTTTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
CTATTCTGACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.5
39.9
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
97.3
1.06
0.5
96.6
11.5
Minor 5ss
34.4
-1.8
3.4
47.6
47.8
Minor BPS
50.8
0.1
1.7
68.83
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021560
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041965
44552143 - 44583149
31007
ENSAPLT00000032508
44552143 - 44583149
31007
ENSAPLT00000029210
44552143 - 44721634
169492