About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_44555975_44720775_R

Intron Information:

Intron Rank:
137656
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
44555975 - 44720775
Intron Length:
164801

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCATTT
5'SS Class:
weak_major
3'SS Sequence:
CTTCTTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
TTCTTTCCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.2
74.2
37.1
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
87.1
0.83
0.7
82.8
25.8
Minor 5ss
69.3
0.65
2.3
82.5
37.1
Minor BPS
50.4
0.01
1.9
67.52
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021560
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029210
44552143 - 44721634
169492