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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4473142_4475919_R

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4473142 - 4475919
Intron Length:
2778

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TATTTGTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GTACACTGAACT
Flanking Amino Acid:
FADRTVVTIAHRVHTILNAD
Intron Amino Acid Position:
1550

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.8
35.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
87.2
0.84
0.8
84.8
35.4
Minor 5ss
38.2
-1.3
2.7
49.5
40.3
Minor BPS
57
0.3
1.7
74.09
41.4

Associated Gene:

Gene:
ABCC8
Ensembl Gene ID:
ENSAPLG00000009025
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039181
4472915 - 4546067
73153
ENSAPLT00000030308
4472915 - 4546067
73153
ENSAPLT00000025423
4472915 - 4546067
73153
ENSAPLT00000009557
4472915 - 4546067
73153