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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4475983_4477342_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4475983 - 4477342
Intron Length:
1360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAT
U12 Branch Point Sequence:
TGTTCTATGAAA
Flanking Amino Acid:
EATASIDMATENILQKVVMT
Intron Amino Acid Position:
1529

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
75.2
37.4
Major BPS
60.7
0.27
1
65.3
28.1
Major PPT
87.2
0.84
0.6
84.1
23.8
Minor 5ss
38.8
-1.3
2.9
50
46.2
Minor BPS
54.3
0.13
1.7
69.36
36.3

Associated Gene:

Gene:
ABCC8
Ensembl Gene ID:
ENSAPLG00000009025
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030308
4472915 - 4546067
73153
ENSAPLT00000025423
4472915 - 4546067
73153
ENSAPLT00000009557
4472915 - 4546067
73153
ENSAPLT00000039181
4472915 - 4546067
73153