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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4477477_4478285_R

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4477477 - 4478285
Intron Length:
809

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATGAGA
5'SS Class:
major
3'SS Sequence:
GTATCCTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
TTTGCTGTATCC
Flanking Amino Acid:
HVVKALPGGLDAIVTEGGEN
Intron Amino Acid Position:
1484

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.5
39.9
Major BPS
68
0.45
1
57.8
39
Major PPT
78.9
0.65
0.9
69.7
41.3
Minor 5ss
31.7
-2.1
3.1
40.5
45.2
Minor BPS
48.6
-0.1
2.3
69.42
42.8

Associated Gene:

Gene:
ABCC8
Ensembl Gene ID:
ENSAPLG00000009025
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030308
4472915 - 4546067
73153
ENSAPLT00000025423
4472915 - 4546067
73153
ENSAPLT00000009557
4472915 - 4546067
73153
ENSAPLT00000039181
4472915 - 4546067
73153