About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4478390_4479798_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4478390 - 4479798
Intron Length:
1409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
CATCTAACTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
GTGTCTTGAATT
Flanking Amino Acid:
QDPILFSGTIRFNLDPEKKC
Intron Amino Acid Position:
1449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
75.7
40.1
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
66.9
0.38
0.9
60.2
35.2
Minor 5ss
42.5
-0.8
2.9
60.1
44
Minor BPS
66.2
0.59
1.4
77.42
39.4

Associated Gene:

Gene:
ABCC8
Ensembl Gene ID:
ENSAPLG00000009025
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039181
4472915 - 4546067
73153
ENSAPLT00000030308
4472915 - 4546067
73153
ENSAPLT00000025423
4472915 - 4546067
73153
ENSAPLT00000009557
4472915 - 4546067
73153