About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4479908_4480670_R


Intron Information:

Intron Rank:
34

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
4479908 - 4480670

Intron Length:
763

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AGG|GTAAGATTA

5'SS Class:
strong_major

3'SS Sequence:
TTCTTTTGAATAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TGATAAA

U12 Branch Point Sequence:
TTCTTTTGAATA

Flanking Amino Acid:
AFFRMVDTFEGRIIIDGIDI

Intron Amino Acid Position:
1413

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
83.7
0.79
1
77.8
33.3

Major BPS
63.5
0.33
1.2
64.3
39.6

Major PPT
74.4
0.55
0.9
73.2
36

Minor 5ss
41.1
-1
3.1
48.1
47.5

Minor BPS
63.6
0.42
1.4
71.08
35.7

Associated Gene:

Gene:
ABCC8

Ensembl Gene ID:

Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

4472915 - 4546067
73153

4472915 - 4546067
73153

4472915 - 4546067
73153

4472915 - 4546067
73153