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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4482621_4483821_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4482621 - 4483821
Intron Length:
1201

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ATG|GCAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CATATTCCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTGTTCATATTC
Flanking Amino Acid:
AANRWLEVRMEYIGACVVLI
Intron Amino Acid Position:
1265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
1
92.3
24.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
77.8
0.63
0.9
74
36.2
Minor 5ss
31.5
-2.1
4
48.3
41.8
Minor BPS
51.1
0.01
1.9
66.47
39.7

Associated Gene:

Gene:
ABCC8
Ensembl Gene ID:
ENSAPLG00000009025
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030308
4472915 - 4546067
73153
ENSAPLT00000025423
4472915 - 4546067
73153
ENSAPLT00000009557
4472915 - 4546067
73153
ENSAPLT00000039181
4472915 - 4546067
73153