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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4483925_4488801_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4483925 - 4488801
Intron Length:
4877

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTTCTTCTTT
Flanking Amino Acid:
FIQKYFRVASRYEAKFRQKL
Intron Amino Acid Position:
1199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
67.1
38.4
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
93.7
0.98
0.6
92.5
17.4
Minor 5ss
30
-2.3
3.5
39.6
45.9
Minor BPS
46
-0.2
3.6
82.89
39.2

Associated Gene:

Gene:
ABCC8
Ensembl Gene ID:
ENSAPLG00000009025
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025423
4472915 - 4546067
73153