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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4492154_4492736_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4492154 - 4492736
Intron Length:
583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGGC
5'SS Class:
major
3'SS Sequence:
CGGCATGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAATAA
U12 Branch Point Sequence:
TTTTCCGGCATG
Flanking Amino Acid:
ALLKDDEEDEEEVTESDDED
Intron Amino Acid Position:
987

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
66.6
37.7
Major BPS
50.5
0.01
1.1
47.7
35.7
Major PPT
65.1
0.34
1
57.1
43
Minor 5ss
30.1
-2.3
3.4
41.8
45
Minor BPS
45.7
-0.4
2.5
63.83
44.5

Associated Gene:

Gene:
ABCC8
Ensembl Gene ID:
ENSAPLG00000009025
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030308
4472915 - 4546067
73153
ENSAPLT00000025423
4472915 - 4546067
73153
ENSAPLT00000009557
4472915 - 4546067
73153
ENSAPLT00000039181
4472915 - 4546067
73153