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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4492837_4493535_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4492837 - 4493535
Intron Length:
699

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTTTGAT
5'SS Class:
major
3'SS Sequence:
CTTCCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTAAT
U12 Branch Point Sequence:
TCTGGTTGAAAG
Flanking Amino Acid:
MNRQDQELEKETIIESKTVL
Intron Amino Acid Position:
954

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.5
0.39
1.2
68
36.6
Major BPS
74
0.6
1.2
75.9
36.3
Major PPT
85.3
0.8
0.6
84.4
23.5
Minor 5ss
36.9
-1.5
3.1
50
46.3
Minor BPS
43.3
-0.6
2
48.72
45.1

Associated Gene:

Gene:
ABCC8
Ensembl Gene ID:
ENSAPLG00000009025
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039181
4472915 - 4546067
73153
ENSAPLT00000030308
4472915 - 4546067
73153
ENSAPLT00000025423
4472915 - 4546067
73153
ENSAPLT00000009557
4472915 - 4546067
73153