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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4503266_4504405_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4503266 - 4504405
Intron Length:
1140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTCTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
CTTACAGCAATA
Flanking Amino Acid:
TSDSETGEDVSPEKESPVEM
Intron Amino Acid Position:
765

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
77.4
33.4
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
81.7
0.71
0.8
77.8
31
Minor 5ss
44.5
-0.6
3.2
63.6
48.1
Minor BPS
42.2
-0.6
2.3
57.41
42.2

Associated Gene:

Gene:
ABCC8
Ensembl Gene ID:
ENSAPLG00000009025
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025423
4472915 - 4546067
73153
ENSAPLT00000009557
4472915 - 4546067
73153
ENSAPLT00000039181
4472915 - 4546067
73153