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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_45125775_45135982_F

Intron Information:

Intron Rank:
149563
Intron Class:
major
Intron Phase:
Intron Coordinates:
45125775 - 45135982
Intron Length:
10208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
TATCCTCTCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGGAT
U12 Branch Point Sequence:
GATGACTTATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
82
32.3
Major BPS
71.4
0.53
1.4
71.4
45.1
Major PPT
79.7
0.67
0.8
77.2
31
Minor 5ss
48.3
-0.1
2.8
72.9
37.4
Minor BPS
49.6
-0
1.9
61.55
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030481
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036563
45124590 - 45138523
13934