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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4515103_4515410_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4515103 - 4515410
Intron Length:
308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TGTATCTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TTATGGCTAAAT
Flanking Amino Acid:
AAIPIAAVLITFVVHAHLTR
Intron Amino Acid Position:
572

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
77.3
37.6
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
79
0.65
0.8
73.8
36.7
Minor 5ss
41.2
-1
2.8
53.2
38.8
Minor BPS
43.4
-0.4
2.6
70.93
45.3

Associated Gene:

Gene:
ABCC8
Ensembl Gene ID:
ENSAPLG00000009025
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030308
4472915 - 4546067
73153
ENSAPLT00000025423
4472915 - 4546067
73153
ENSAPLT00000009557
4472915 - 4546067
73153
ENSAPLT00000039181
4472915 - 4546067
73153