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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4515452_4520711_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4515452 - 4520711
Intron Length:
5260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTCTC
5'SS Class:
major
3'SS Sequence:
TTTTCCTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTAAAT
U12 Branch Point Sequence:
TTTTCCTTCACA
Flanking Amino Acid:
KSFALYTSISIFMNAAIPIA
Intron Amino Acid Position:
558

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
70.3
40.5
Major BPS
69.8
0.49
1.1
75.5
35.2
Major PPT
88.4
0.86
0.6
83.8
24.4
Minor 5ss
41
-1
3
59.3
39
Minor BPS
81.8
0.99
1.6
91.36
30.2

Associated Gene:

Gene:
ABCC8
Ensembl Gene ID:
ENSAPLG00000009025
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030308
4472915 - 4546067
73153
ENSAPLT00000025423
4472915 - 4546067
73153
ENSAPLT00000009557
4472915 - 4546067
73153
ENSAPLT00000039181
4472915 - 4546067
73153