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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_45261494_45262134_F

Intron Information:

Intron Rank:
125434
Intron Class:
major
Intron Phase:
Intron Coordinates:
45261494 - 45262134
Intron Length:
641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAACG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATTATTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.8
74.2
36.1
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
90.6
0.91
0.6
85.8
21.3
Minor 5ss
28.3
-2.5
2.7
32
42.1
Minor BPS
56.7
0.29
1.8
77.56
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017582
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029942
45261394 - 45285508
24115