About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_45270109_45283937_F

Intron Information:

Intron Rank:
125436
Intron Class:
major
Intron Phase:
Intron Coordinates:
45270109 - 45283937
Intron Length:
13829

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TCCTATTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
CTTTTCCTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
0.9
79.5
29.4
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
80.3
0.68
0.8
75
33
Minor 5ss
43.7
-0.7
2.9
59.8
40
Minor BPS
53.2
0.18
1.9
75.75
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017582
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029942
45261394 - 45285508
24115