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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_45472000_45554074_R

Intron Information:

Intron Rank:
154298
Intron Class:
major
Intron Phase:
Intron Coordinates:
45472000 - 45554074
Intron Length:
82075

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTTCC
5'SS Class:
major
3'SS Sequence:
TTCTCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTCTCTTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
69.9
35.6
Major BPS
80
0.75
1
78.6
31
Major PPT
91.6
0.94
0.6
87
23.6
Minor 5ss
43.7
-0.7
2.7
59.7
38.5
Minor BPS
70.7
0.65
1.6
78.99
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030518
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021859
45454044 - 45554129
100086