Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_45472921_45474215_R

Intron Information:

Intron Rank:

154299

Intron Class:

major

Intron Phase:

Intron Coordinates:

45472921 - 45474215

Intron Length:

1295

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGTGTG

5'SS Class:

strong_major

3'SS Sequence:

AATTTCTCTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGTTAAA

U12 Branch Point Sequence:

TAACCCTCAAAA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.76

72.2

39.5

Major BPS

66.4

0.41

1.1

67.7

36.5

Major PPT

81.8

0.72

0.8

78.5

Minor 5ss

30.4

-2.2

3.2

31.9

42.5

Minor BPS

56.1

0.19

1.7

65.54

39.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030518

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022496

45472914 - 45554129

81216