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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_45633369_45637617_F

Intron Information:

Intron Rank:
128247
Intron Class:
major
Intron Phase:
Intron Coordinates:
45633369 - 45637617
Intron Length:
4249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TCATATTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTATCATGACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
80.7
33.7
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
77.6
0.62
0.9
71.9
37.5
Minor 5ss
36.4
-1.5
3.2
50.5
40
Minor BPS
47.9
-0
2.1
72.81
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019066
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035217
45632674 - 45669763
37090
ENSAPLT00000029495
45632674 - 45665069
32396
ENSAPLT00000023677
45632674 - 45669763
37090