About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_45637694_45669007_F

Intron Information:

Intron Rank:
128248
Intron Class:
major
Intron Phase:
Intron Coordinates:
45637694 - 45669007
Intron Length:
31314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTTA
5'SS Class:
strong_major
3'SS Sequence:
AAATCTTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
ATTTTCAAAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
84.8
28.2
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
70.1
0.45
0.9
66.7
39.4
Minor 5ss
40.3
-1.1
3.3
55.3
48.9
Minor BPS
53
0.09
1.9
70.04
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019066
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023677
45632674 - 45669763
37090
ENSAPLT00000035217
45632674 - 45669763
37090