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Intron Name: Anas_platyrhynchos_platyrhynchos_5_4565604_4567416_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4565604 - 4567416

Intron Length:

1813

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTAAGTGCA

5'SS Class:

strong_major

3'SS Sequence:

TCGCTTTCTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGCTAAC

U12 Branch Point Sequence:

CTACAGCTAACA

Flanking Amino Acid:

VSPPKEYDDEMTFF*

Intron Amino Acid Position:

564

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.6

0.79

77.1

31.3

Major BPS

60.6

0.26

1.1

61.4

34.2

Major PPT

78.4

0.64

0.8

77.2

31.6

Minor 5ss

35.4

-1.7

3.2

46.1

42.2

Minor BPS

41.8

-0.6

2.4

55.65

42.6

Associated Gene:

Gene:

USH1C

Ensembl Gene ID:

ENSAPLG00000008735

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042047

4564712 - 4603434

38723

ENSAPLT00000035638

4564712 - 4607843

43132

ENSAPLT00000032247

4564712 - 4603434

38723