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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_45669074_45669257_F

Intron Information:

Intron Rank:
128253
Intron Class:
major
Intron Phase:
Intron Coordinates:
45669074 - 45669257
Intron Length:
184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCTCC
5'SS Class:
major
3'SS Sequence:
TATGTATTCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TATGTATTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
69.5
36.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
72.8
0.51
0.9
70.6
39.8
Minor 5ss
46.8
-0.3
2.7
60.7
37.9
Minor BPS
61.2
0.43
1.7
77.76
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019066
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035217
45632674 - 45669763
37090