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Intron Name: Anas_platyrhynchos_platyrhynchos_5_4567473_4568165_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4567473 - 4568165

Intron Length:

693

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAAGTACA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTGTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CACACAT

U12 Branch Point Sequence:

TTTAGCAGCACA

Flanking Amino Acid:

TLAKAWNMGGDWIDLVIAVS

Intron Amino Acid Position:

585

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.5

0.88

0.9

80.7

33.8

Major BPS

57.6

0.19

64.6

32.2

Major PPT

92.2

0.95

0.7

88.3

28.9

Minor 5ss

35.6

-1.6

2.6

35.6

40.5

Minor BPS

41.3

-0.6

2.4

62.11

43.6

Associated Gene:

Gene:

USH1C

Ensembl Gene ID:

ENSAPLG00000008735

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042047

4564712 - 4603434

38723

ENSAPLT00000035638

4564712 - 4607843

43132

ENSAPLT00000032247

4564712 - 4603434

38723

ENSAPLT00000009118

4566355 - 4603434

37080