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Intron Name: Anas_platyrhynchos_platyrhynchos_5_4568276_4569567_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4568276 - 4569567

Intron Length:

1292

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGTAAC

5'SS Class:

strong_major

3'SS Sequence:

GGTCTGCCACCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTACAT

U12 Branch Point Sequence:

TTTGCTTACATG

Flanking Amino Acid:

IYEGGAADKHGGIVKGDEIL

Intron Amino Acid Position:

548

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.2

0.83

0.8

79.3

28.9

Major BPS

70.4

0.51

1.1

78.7

33.6

Major PPT

61.4

0.26

51.9

42.7

Minor 5ss

30.7

-2.2

2.6

33.5

35.6

Minor BPS

45.9

-0.4

2.2

57.98

44.9

Associated Gene:

Gene:

USH1C

Ensembl Gene ID:

ENSAPLG00000008735

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009118

4566355 - 4603434

37080

ENSAPLT00000042047

4564712 - 4603434

38723

ENSAPLT00000035638

4564712 - 4607843

43132

ENSAPLT00000032247

4564712 - 4603434

38723