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Intron Name: Anas_platyrhynchos_platyrhynchos_5_4569668_4569813_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4569668 - 4569813

Intron Length:

146

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTACT

5'SS Class:

strong_major

3'SS Sequence:

TCTTTTTTAATAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTGAA

U12 Branch Point Sequence:

TCTTTTTTAATA

Flanking Amino Acid:

KDVRLLRIKKEGSLDLAVEG

Intron Amino Acid Position:

515

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

98.1

1.13

0.6

93.5

20.3

Major BPS

82.1

0.8

71.6

36.4

Major PPT

82.8

0.74

0.8

29.6

Minor 5ss

38.4

-1.3

2.8

52.3

44.3

Minor BPS

0.81

1.1

33.3

Associated Gene:

Gene:

USH1C

Ensembl Gene ID:

ENSAPLG00000008735

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042047

4564712 - 4603434

38723

ENSAPLT00000035638

4564712 - 4607843

43132

ENSAPLT00000032247

4564712 - 4603434

38723

ENSAPLT00000009118

4566355 - 4603434

37080