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Intron Name: Anas_platyrhynchos_platyrhynchos_5_4569868_4570178_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4569868 - 4570178

Intron Length:

311

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGGAAA

5'SS Class:

strong_major

3'SS Sequence:

TATCTTTTCGTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAATGAA

U12 Branch Point Sequence:

ATAACCATGATA

Flanking Amino Acid:

YVEDFDPYSMFTPEQIMGKD

Intron Amino Acid Position:

497

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.79

0.9

76.6

33.6

Major BPS

58.9

0.22

49.8

35.1

Major PPT

80.5

0.69

0.8

31.2

Minor 5ss

31.7

-2.1

3.1

36.4

Minor BPS

0.06

1.6

63.36

36.2

Associated Gene:

Gene:

USH1C

Ensembl Gene ID:

ENSAPLG00000008735

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009118

4566355 - 4603434

37080

ENSAPLT00000042047

4564712 - 4603434

38723

ENSAPLT00000035638

4564712 - 4607843

43132

ENSAPLT00000032247

4564712 - 4603434

38723