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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4570221_4581781_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4570221 - 4581781
Intron Length:
11561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTATTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
GTTTCTACAACT
Flanking Amino Acid:
ISSVENESPEGFQKYVEDFD
Intron Amino Acid Position:
483

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
83.4
0.75
0.8
81.4
35.2
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
60.6
0.41
1.8
82.32
38.6

Associated Gene:

Gene:
USH1C
Ensembl Gene ID:
ENSAPLG00000008735
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009118
4566355 - 4603434
37080
ENSAPLT00000042047
4564712 - 4603434
38723
ENSAPLT00000035638
4564712 - 4607843
43132