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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4570221_4585770_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4570221 - 4585770
Intron Length:
15550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGCCGC
5'SS Class:
major
3'SS Sequence:
GTTTTATTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
GTTTCTACAACT
Flanking Amino Acid:
DEGTMKQDKKGFQKYVEDFD
Intron Amino Acid Position:
444

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.9
0.37
1.2
51.8
45.1
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
83.4
0.75
0.8
81.4
35.2
Minor 5ss
40.7
-1
2.8
51.8
44.9
Minor BPS
60.6
0.41
1.8
82.32
38.6

Associated Gene:

Gene:
USH1C
Ensembl Gene ID:
ENSAPLG00000008735
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032247
4564712 - 4603434
38723