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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_45759914_45761013_R

Intron Information:

Intron Rank:
141931
Intron Class:
major
Intron Phase:
Intron Coordinates:
45759914 - 45761013
Intron Length:
1100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGTA
5'SS Class:
strong_major
3'SS Sequence:
CTCCCTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
TAGGACTTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
75.5
34.1
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
81
0.7
0.7
72.4
32.3
Minor 5ss
32.2
-2
3.7
46.2
49.1
Minor BPS
62.5
0.37
1.7
68.6
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023685
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032279
45759149 - 45761843
2695