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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_45782152_45783346_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45782152 - 45783346
Intron Length:
1195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
CATGTTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAA
U12 Branch Point Sequence:
TTAACCTTAAGC
Flanking Amino Acid:
DGTYRVTGDLAGEEVLMKGL
Intron Amino Acid Position:
724

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
72.1
0.55
1.2
63.7
43.9
Major PPT
82.2
0.73
0.9
75.8
37.8
Minor 5ss
39.7
-1.2
2.9
52.1
44.7
Minor BPS
69
0.57
1.7
76.26
39.6

Associated Gene:

Gene:
GALC
Ensembl Gene ID:
ENSAPLG00000003794
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046908
45780066 - 45818321
38256
ENSAPLT00000031509
45780066 - 45818321
38256
ENSAPLT00000003925
45780066 - 45818321
38256