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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_45788262_45788881_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45788262 - 45788881
Intron Length:
620

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
CATTTCATTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
RATFYLKGSFYLVETLQVWY
Intron Amino Acid Position:
531

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1.1
72.7
38.1
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
76.3
0.59
0.8
70.8
34.3
Minor 5ss
37.7
-1.4
2.8
48.3
41.7
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
GALC
Ensembl Gene ID:
ENSAPLG00000003794
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003925
45780066 - 45818321
38256
ENSAPLT00000046908
45780066 - 45818321
38256
ENSAPLT00000031509
45780066 - 45818321
38256