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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_45793699_45797555_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
45793699 - 45797555
Intron Length:
3857

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGGGGT
5'SS Class:
major
3'SS Sequence:
AAACACTGTATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCTTTTTAAAA
Flanking Amino Acid:
SELHDVVDVIGAHYPGTKTV
Intron Amino Acid Position:
364

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
60.6
41.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
54.8
0.11
1
47
40.2
Minor 5ss
29.1
-2.4
3.8
37.3
47.4
Minor BPS
70.1
0.63
1.3
75.65
35.9

Associated Gene:

Gene:
GALC
Ensembl Gene ID:
ENSAPLG00000003794
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003925
45780066 - 45818321
38256