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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_45793699_45802798_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
45793699 - 45802798
Intron Length:
9100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
AAACACTGTATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCTTTTTAAAA
Flanking Amino Acid:
PYLNDAVQVVGAHYPGTKTV
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
76.2
39.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
54.8
0.11
1
47
40.2
Minor 5ss
35.9
-1.6
3.3
40.9
45.3
Minor BPS
70.1
0.63
1.3
75.65
35.9

Associated Gene:

Gene:
GALC
Ensembl Gene ID:
ENSAPLG00000003794
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031509
45780066 - 45818321
38256