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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_45814905_45817293_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45814905 - 45817293
Intron Length:
2389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCCT
5'SS Class:
major
3'SS Sequence:
CTCTTTTTCCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
ATAGTCTGACTT
Flanking Amino Acid:
RSQILDYLFKPNFGASLHIL
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69.4
41.1
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
81.8
0.72
0.7
76.1
32.4
Minor 5ss
32.7
-2
3.4
48.4
47.3
Minor BPS
47
-0.1
1.8
63.33
41.4

Associated Gene:

Gene:
GALC
Ensembl Gene ID:
ENSAPLG00000003794
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031509
45780066 - 45818321
38256
ENSAPLT00000003925
45780066 - 45818321
38256
ENSAPLT00000046908
45780066 - 45818321
38256