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Intron Name: Anas_platyrhynchos_platyrhynchos_5_4581899_4585770_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

4581899 - 4585770

Intron Length:

3872

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTTGCCGC

5'SS Class:

major

3'SS Sequence:

TGATGTGGTTAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CTCTAAT

U12 Branch Point Sequence:

TTTTTGTGAACT

Flanking Amino Acid:

DEGTMKQDKKVSETEREDLE

Intron Amino Acid Position:

444

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.9

0.37

1.2

51.8

45.1

Major BPS

82.2

0.8

0.9

81.6

Major PPT

53.7

0.08

1.2

56.3

47.7

Minor 5ss

40.7

-1

2.8

51.8

44.9

Minor BPS

63.2

0.49

2.2

88.41

36.6

Associated Gene:

Gene:

USH1C

Ensembl Gene ID:

ENSAPLG00000008735

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042047

4564712 - 4603434

38723

ENSAPLT00000035638

4564712 - 4607843

43132

ENSAPLT00000009118

4566355 - 4603434

37080