About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4585848_4586250_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4585848 - 4586250
Intron Length:
403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
ATCTCCTCACTC
Flanking Amino Acid:
VHSAPHSKHKKDLKGVAHDQ
Intron Amino Acid Position:
418

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
84.2
26.3
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
84.5
0.78
0.7
77.9
36.6
Minor 5ss
37.7
-1.4
2.7
46.1
36.1
Minor BPS
53.2
0.08
1.8
64.69
41.4

Associated Gene:

Gene:
USH1C
Ensembl Gene ID:
ENSAPLG00000008735
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009118
4566355 - 4603434
37080
ENSAPLT00000042047
4564712 - 4603434
38723
ENSAPLT00000035638
4564712 - 4607843
43132
ENSAPLT00000032247
4564712 - 4603434
38723