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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4586376_4587631_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4586376 - 4587631
Intron Length:
1256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TTTTTCCTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTTCCTTATAG
Flanking Amino Acid:
EEERYRREIAQITAEEEKIK
Intron Amino Acid Position:
376

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
75.5
34.3
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
89.3
0.88
0.6
85
22.8
Minor 5ss
38.2
-1.3
2.8
51.4
39.2
Minor BPS
69.3
0.47
1.8
76.89
40.3

Associated Gene:

Gene:
USH1C
Ensembl Gene ID:
ENSAPLG00000008735
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042047
4564712 - 4603434
38723
ENSAPLT00000035638
4564712 - 4607843
43132
ENSAPLT00000032247
4564712 - 4603434
38723
ENSAPLT00000009118
4566355 - 4603434
37080