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Intron Name: Anas_platyrhynchos_platyrhynchos_5_4587698_4588302_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4587698 - 4588302

Intron Length:

605

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATT|GTAAGGACT

5'SS Class:

major

3'SS Sequence:

CATGATGTTGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATGAT

U12 Branch Point Sequence:

GATGTCCTAATT

Flanking Amino Acid:

IIKEQQEKERLRKMEISQKA

Intron Amino Acid Position:

354

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.9

0.52

1.1

70.8

38.8

Major BPS

84.6

0.86

41.2

Major PPT

65.3

0.34

58.1

42.5

Minor 5ss

37.5

-1.4

3.3

56.1

42.2

Minor BPS

0.17

1.8

70.19

40.9

Associated Gene:

Gene:

USH1C

Ensembl Gene ID:

ENSAPLG00000008735

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042047

4564712 - 4603434

38723

ENSAPLT00000035638

4564712 - 4607843

43132

ENSAPLT00000032247

4564712 - 4603434

38723

ENSAPLT00000009118

4566355 - 4603434

37080